I have got unknown DNA or Protein seq. Its just combination of letters and I want to know what is it actually? What should I do?
Yes, you are correct, the first thing you can do is BLAST and see weather seq. you have aligned with some other seq in the Database.BLAST does not tell what the seq is if is not in database :)
Let's do BLAST of some seq step by step :
Step 1: Choose any seq or getting ready for BLAST:
Have your seq in note pad or any where from where you can copy directly
Lets any random seq e.g. I have choosen following seq.
>Unknown seq
ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAG
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGG
GGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGT
GCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACT
GTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCA
TCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT
GCCCTGGCCCACAAGTATCACTAA
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGG
GGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGT
GCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACT
GTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCA
TCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT
GCCCTGGCCCACAAGTATCACTAA
Step 2: Go the webpage :
https://blast.ncbi.nlm.nih.gov/Blast.cgi click on this link it will take to the following page
Depending upon what is your seq choose Nucleotide or Protein seq. For now we have chosen the Nucleotide seq so we will choose Nucleotide seq (shown with green arrow) Now new window will open
Step 2: Paste your seq and set parameters : :
Now click on BLAST button and... Keep Calm and just wait :),
And we are there Let's check what we have got :)
let's read and understand results
1. query is our seq. which is in green
2. red lines are the matching seq from database we have hits means our seq is already there in database and now we know what it is
3. Go below the description first 3 hits are 100 % matching so its our seq basically that is TPA: Homo sapiens GLNA1 gene for globin A1
Congrats!!!! you just completed BLAST :)


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